RnoEX6062124 @ rn6
Exon Skipping
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9920068-9921497:-
Coord C1 exon
chr20:9921454-9921497
Coord A exon
chr20:9920915-9921080
Coord C2 exon
chr20:9920068-9920237
Length
166 bp
Sequences
Splice sites
3' ss Seq
AAACCTTTGTTCCTCTGTAGCCT
3' ss Score
7.75
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGAAGGCTGCACCTCAGGCCATGTGGTCACCTTGAAGTGCTCAG
Seq A exon
CCTGTGGCATGAGAACTGGCTACAGTCCCCGCATTGTGGGTGGAAACGTGTCCTCGCTCACTCAGTGGCCCTGGCAGGTCAGCCTCCAGTTCCAGGGGTACCACCTATGTGGGGGCTCCGTCATCACCCCTCTGTGGATTGTCACCGCTGCGCACTGTGTTTACGA
Seq C2 exon
CCTGTACCACCCCAAGTCCTGGACTGTCCAGGTGGGTCTCGTGTCCCTGATGGACAGTCCTGTGCCCTCCCACCTGGTGGAGAAAATCATCTACCACAGCAAGTACAAACCAAAGCGACTGGGCAATGACATCGCCCTCATGAAGCTGTCCGAGCCACTCACCTTTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.0=100)
A:
PF154941=SRCR_2=PD(5.0=8.9),PF0008921=Trypsin=PU(19.4=78.6)
C2:
PF0008921=Trypsin=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCCATGTGGTCACCTT
R:
CGTCAAAGGTGAGTGGCTCG
Band lengths:
202-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]