DreEX6035861 @ danRer10
Exon Skipping
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19749751-19750292:-
Coord C1 exon
chr9:19750246-19750292
Coord A exon
chr9:19749996-19750161
Coord C2 exon
chr9:19749751-19749920
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTATTTCTGCACAGCTT
3' ss Score
8.06
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TAAAACTAAGTGCAGTCTGGGAATGGTAACAGCACTTAAGTGCATAG
Seq A exon
CTTGTGGTTCAAGACCCAAGTTCAGCGCTCGTATAGTTGGTGGCAACCTGTCAGCTGAGGGTCAGTTCCCCTGGCAGGTCAGCCTACACTTCCAGAATGAGCACCTCTGTGGCGGATCCATCATAACGTCTCGCTGGATCCTCACTGCTGCCCACTGTGTGTACGG
Seq C2 exon
GATTGCTTATCCTATGTATTGGATGGTCTATGCGGGATTGACCGAGCTGCCACTGAATGCAGTAAAGGCTTTCGCCGTGGAGAAGATCATTTATCACAGCCGCTACAGACCCAAAGGCCTGGACCATGATATTGCTCTGATGAAACTGGCGCAGCCCCTCACCTTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.7=100)
A:
PF154941=SRCR_2=PD(41.7=44.6),PF0008921=Trypsin=PU(19.4=78.6)
C2:
PF0008921=Trypsin=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGTGCAGTCTGGGAATGGT
R:
CATTGAAGGTGAGGGGCTGC
Band lengths:
212-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]