BtaEX6003792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021280 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:144229427-144231072:-
Coord C1 exon
chr1:144231029-144231072
Coord A exon
chr1:144230289-144230454
Coord C2 exon
chr1:144229427-144229596
Length
166 bp
Sequences
Splice sites
3' ss Seq
CGCTCCCTCTCCCTCTGCAGCCT
3' ss Score
11.27
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GGAGGGATGTACCTCGGGCCACGTGGTTACCTTGAAGTGCTCAG
Seq A exon
CCTGCGGTCTGAGGACGGGCTCCAGCCCCCGCATCGTGGGTGGAAACACATCCTCGCTGGCTCAGTGGCCCTGGCAGGCCAGCCTGCAGTTCCAGGGCTACCACTTGTGCGGAGGGTCCGTCATCACCCCACTGTGGGTTGTCACAGCTGCCCACTGTGTTTATGA
Seq C2 exon
TCTCTACCTCCCCAAGTCCTGGACCATCCAGGTGGGCCTTGTTTCCCTGCTAGACAGTCCAGCCCCCTCCCATCTGGTGGAAAAAATCATCTACCACAGCAAGTACAAGCCGAAGAGATTGGGCAATGACATCGCCCTCATGAAGCTGGCCGGGCCTGTCACTTTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021280-'6-8,'6-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.0=100)
A:
PF154941=SRCR_2=PD(5.0=8.9),PF0008921=Trypsin=PU(19.2=78.6)
C2:
PF0008921=Trypsin=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGATGTACCTCGGGCC
R:
CATTGAAAGTGACAGGCCCGG
Band lengths:
213-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]