DreEX0009537 @ danRer10
Exon Skipping
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26070665-26071575:+
Coord C1 exon
chr7:26070665-26070781
Coord A exon
chr7:26070996-26071120
Coord C2 exon
chr7:26071430-26071575
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTCTCTGGTCCACAGGCC
3' ss Score
11.38
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATCTCAAGACTGTGTCGTCTCTGGTGATCCTCATTACAACACATTTGATGGCAAATTCTACAGCTACATGGGCACTTGCACATACACACTGGCTCGCACCTGCAAAAACAACACCG
Seq A exon
GCCCCTGGTTCTCCATAGAGGGTAAAAATGAAGAGAGAGGAGCTTCTGGCGTTTCCTACCTGAGAAAACTGTACGTGACTGTTGACGGTATCACTGTGACAATGATGAAAAACAAGAGAACTCTG
Seq C2 exon
GTGAATGGACTCAGGGTGACTCTGCCTCACTCTCCATCTCCACTCATTTCTCTGTCTCTTGCTGGGCAATATGTAATCCTTACAACTCCGTTCGGCCTAAAAGTGCAGTGGGATGGCAACCATTATGCCAAGATCTCTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781-'26-28,'26-27,27-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(22.9=87.5)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(31.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACTGTGTCGTCTCTGGT
R:
GGCATAATGGTTGCCATCCCA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]