HsaEX7004302 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100758531-100760536:+
Coord C1 exon
chr7:100758531-100758650
Coord A exon
chr7:100759721-100759845
Coord C2 exon
chr7:100760391-100760536
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCATTCCTCTCCCTACCCAGACC
3' ss Score
9.1
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAGGCACTGCCACCTGCTTGGTCTACGGAGACCCTCATTATGTCACCTTTGACGGGAGGCACTTTGGCTTCATGGGCAAGTGCACTTACATCTTGGCCCAGCCCTGTGGCAACTCAACAG
Seq A exon
ACCCATTCTTCAGGGTGACAGCCAAGAATGAGGAGCAGGGACAGGAAGGCGTGTCCTGCCTGAGCAAAGTCTACGTGACCCTGCCCGAGAGCACCGTCACCCTGCTTAAGGGCAGACGCACTCTG
Seq C2 exon
GTTGGGGGTCAGCAAGTTACTCTCCCAGCCATACCCTCTAAAGGCGTCTTCCTGGGTGCAAGCGGGCGGTTTGTGGAGCTGCAGACGGAGTTCGGTTTGCGGGTGAGATGGGATGGTGACCAGCAGCTGTATGTTACTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(22.9=85.4)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(31.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCCACCTGCTTGG
R:
AACATACAGCTGCTGGTCACC
Band lengths:
252-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains