MmuEX6021799 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137897417-137899160:-
Coord C1 exon
chr5:137899044-137899160
Coord A exon
chr5:137897795-137897919
Coord C2 exon
chr5:137897417-137897562
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCTCTCTCCATCTAGACC
3' ss Score
11.4
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTAAAGCCACTTGCCTGGTCTATGGGGACCTTCATTTTGTCACCTTTGATGAGAGGCACATTGGCTTCACAGGGACATGTACCTACATCTTGACACAAACCTGCAGCAACTCCACAG
Seq A exon
ACCACTTCTTTAGGATAACAGCAAACACCGAAGAACGTGGAGTAGAAGGTGTATCCTGCCTGGACAAAGTTGTCATCTCTCTGCCAGAGACTACCGTTACCATGATCAGTGGCAGACACACATTG
Seq C2 exon
ATTGGGGATCAGGAAGTCACCCTCCCAGCCATACTTTCTGATGACACCTATGTGGGTCTGAGTGGGAGATTTGTGGAGCTGAGGACAACATTTGGTTTGCGTGTGAGATGGGATGGTGACCAGCAGCTTTTTGTGACTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(22.9=87.5)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(31.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGCCACTTGCCTGGTCT
R:
ACAAAAAGCTGCTGGTCACCA
Band lengths:
251-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: