DreEX0010901 @ danRer10
Exon Skipping
Gene
ENSDARG00000037746 | actb1
Description
actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
Coordinates
chr1:7965986-7966975:-
Coord C1 exon
chr1:7966736-7966975
Coord A exon
chr1:7966603-7966644
Coord C2 exon
chr1:7965986-7966424
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCATTTCCTCTTAGGCT
3' ss Score
9.01
5' ss Seq
AAGGTTCAT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAG
Seq A exon
GCTCTGTCACTTGCCATGATCTCTTGATAGGAGGTTCAAAAG
Seq C2 exon
ATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGCCTTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037746-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(33.9=100),PF101834=ESSS=PD(78.6=68.8)
A:
PF0002214=Actin=PD(1.6=22.2)
C2:
PF0002214=Actin=FE(39.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGAGCTCCGTGTTGCC
R:
CCTGGATGGCCACATACATGG
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]