GgaEX1006106 @ galGal4
Exon Skipping
Gene
ENSGALG00000028749 | ACTG1
Description
actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
Coordinates
chr18:9470662-9471643:+
Coord C1 exon
chr18:9470662-9470901
Coord A exon
chr18:9470991-9471028
Coord C2 exon
chr18:9471205-9471643
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCCACCATTTTCAGGGT
3' ss Score
10.88
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GGCGTGATGGTGGGCATGGGGCAGAAGGACAGCTATGTGGGCGATGAGGCGCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGCGTGGCGCCCGAGGAGCACCCGGTGCTGCTCACGGAGGCGCCGCTCAACCCCAAGGCCAACCGCGAGAAGATGACGCAG
Seq A exon
GGTTCTGTTCTCCTGGCATTTCCCCCCTGACGTCTCAG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCTGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCCGGTCGCACCACGGGCATCGTTATGGACTCTGGGGACGGTGTCACCCACACGGTGCCCATCTATGAGGGCTACGCTCTGCCCCACGCCATCCTGCGTCTGGACCTGGCCGGCCGCGACCTGACCGACTACCTCATGAAGATCCTGACAGAGAGGGGCTACAGCTTCACCACCACGGCTGAGAGGGAAATCGTGCGTGACATCAAAGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACTGCTGCCTCTTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGGCAGGTCATCACCATCGGCAACGAGCGGTTCCGGTGTCCGGAGGCTCTGTTCCAACCCTCTTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028749_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(64.2=100),PF101834=ESSS=PD(77.6=65.0)
A:
PF0002214=Actin=PD(1.6=20.0)
C2:
PF0002214=Actin=FE(39.0=100)
Main Inclusion Isoform:
ENSGALT00000045981fB4679
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTACAATGAGCTGCGC
R:
CAGGGGTGTTGAAGGTCTCAA
Band lengths:
127-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]