BtaEX0002280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006189 | ACTG1
Description
Bos taurus actin, gamma 1 (ACTG1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033618]
Coordinates
chr19:51868937-51870024:+
Coord C1 exon
chr19:51868937-51869305
Coord A exon
chr19:51869408-51869449
Coord C2 exon
chr19:51869586-51870024
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTCAATATTTCCAGGGT
3' ss Score
8.63
5' ss Seq
AAGGTTTCT
5' ss Score
0.28
Exon sequences
Seq C1 exon
ATCGCCATGGAAGAAGAAATTGCCGCCCTCGTCATCGACAATGGTTCTGGCATGTGCAAAGCTGGCTTTGCTGGGGATGACGCCCCCCGGGCCGTGTTCCCGTCCATCGTTGGGCGTCCCCGACACCAGGGCGTCATGGTGGGCATGGGGCAGAAGGACAGCTACGTGGGCGACGAGGCCCAGAGCAAGCGTGGCATCCTGACCCTTAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTTTACAACGAGCTGCGTGTGGCCCCCGAGGAGCACCCCGTGCTGCTGACGGAGGCCCCTCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAG
Seq A exon
GGTTCTGTTCTTCTCCTGGCATTTCCTTCCTGAAGTCTCAAG
Seq C2 exon
ATCATGTTCGAGACGTTCAACACTCCTGCCATGTATGTGGCCATCCAGGCTGTGCTGTCTCTGTACGCCTCTGGCCGCACCACTGGCATTGTCATGGACTCTGGGGACGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTCACGGAACGTGGTTACAGCTTTACCACCACAGCCGAGCGGGAAATTGTGCGTGACATCAAGGAGAAGCTCTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCTACCGCTGCATCCTCCTCCTCCTTGGAGAAGAGCTATGAGCTGCCCGATGGTCAGGTGATCACCATTGGCAATGAGCGGTTCCGGTGTCCCGAGGCACTCTTCCAGCCGTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006189_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(91.5=98.3),PF101834=ESSS=WD(100=55.4)
A:
PF0002214=Actin=PD(6.9=81.8)
C2:
PF0002214=Actin=FE(39.0=100)
Main Inclusion Isoform:
ENSBTAT00000008132fB362
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATCTGGCACCACACCT
R:
ATGGCAGGAGTGTTGAACGTC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development