HsaEX1002538 @ hg38
Exon Skipping
Gene
ENSG00000184009 | ACTG1
Description
actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
Coordinates
chr17:81511188-81512142:-
Coord C1 exon
chr17:81511903-81512142
Coord A exon
chr17:81511763-81511803
Coord C2 exon
chr17:81511188-81511626
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTCGCTGTTCCAGGCT
3' ss Score
9.99
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GGCGTCATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGCGACGAGGCCCAGAGCAAGCGTGGCATCCTGACCCTGAAGTACCCCATTGAGCATGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCGGAGGAGCACCCAGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACTCAG
Seq A exon
GCTCTGTTCCTCTCCCGGCATTTCCTCCCTGAAGCCTCCAG
Seq C2 exon
ATTATGTTTGAGACCTTCAACACCCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGGCGCACCACTGGCATTGTCATGGACTCTGGAGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATCCTCACTGAGCGAGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGCGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCATCCTCCTCTTCTCTGGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184009_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(21.1=100)
A:
PF0002214=Actin=PD(6.9=64.3)
C2:
PF0002214=Actin=FE(39.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCACCACACCTTCTACA
R:
CGGGGTGTTGAAGGTCTCAAA
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains