DreEX0010906 @ danRer10
Exon Skipping
Gene
ENSDARG00000037870 | actb2
Description
actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
Coordinates
chr3:40385287-40386253:-
Coord C1 exon
chr3:40386014-40386253
Coord A exon
chr3:40385876-40385919
Coord C2 exon
chr3:40385287-40385311
Length
44 bp
Sequences
Splice sites
3' ss Seq
CATTGGTTCACTTCCTCCAGGCT
3' ss Score
6.67
5' ss Seq
CAGGTTATC
5' ss Score
-0.23
Exon sequences
Seq C1 exon
GGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAG
Seq A exon
GCTTTGTGTCCTCTGAGCTCCTGAGTTTCTCCTCTTCTCAGCAG
Seq C2 exon
GCCCTGTTCCAGCCATCCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037870_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.571 C2=0.007
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(64.2=100),PF101834=ESSS=PD(77.6=65.0)
A:
PF0002214=Actin=PD(1.6=25.0)
C2:
PF0002214=Actin=FE(39.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCACACCTTCTACAACG
R:
CCAAGAAGGATGGCTGGAACA
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]