MmuEX0003613 @ mm10
Exon Skipping
Gene
ENSMUSG00000062825 | Actg1
Description
actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
Coordinates
chr11:120346637-120347875:-
Coord C1 exon
chr11:120347636-120347875
Coord A exon
chr11:120347492-120347536
Coord C2 exon
chr11:120346637-120346818
Length
45 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTTTGGTGTTTCTAGGGT
3' ss Score
9.27
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GGCGTCATGGTGGGCATGGGCCAGAAAGACTCATACGTGGGTGACGAGGCCCAGAGCAAGAGGGGTATCCTGACCCTGAAGTACCCTATCGAACACGGCATTGTCACTAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCTGAGGAGCACCCGGTGCTTCTGACCGAGGCCCCCCTGAACCCCAAAGCTAACAGAGAGAAGATGACGCAG
Seq A exon
GGTTCTGTTCCTCTTCTCCTGGCATTTCCTCCCTGAAGCCTCCAG
Seq C2 exon
GCATGGAGTCCTGTGGTATCCATGAGACCACTTTCAACTCCATCATGAAGTGTGATGTGGATATCCGCAAAGACCTGTATGCCAATACAGTGCTGTCTGGTGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTAGCACCTAGCACGATGAAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062825_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(21.1=100)
A:
PF0002214=Actin=PD(1.6=16.7)
C2:
PF0002214=Actin=PD(8.2=6.6),PF0002214=Actin=FE(54.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGAACCCCAAAGCTAAC
R:
ACCAGACAGCACTGTATTGGC
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types