DreEX0012143 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23561078-23741071:+
Coord C1 exon
chr23:23561078-23561339
Coord A exon
chr23:23676363-23676383
Coord C2 exon
chr23:23741033-23741071
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTTACTCTTGCCTCCTGAAGATC
3' ss Score
6.36
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCAGAGTATGGCGCTACCTGAAAGGCAAGACCATGGTAAATGGAGAAGTGCTGCTGGATGGAGGAAACAAAGTGATGATCGGTGGGTTTGGGGACCCCCATATTTGTGACAATCAAGTGGCCACCGGAGATACCCGCATTTTCTTTGTCAACTTGGCTCCTGAGTACATGTGGCCGAACCACAAGAACGAACTGATGCTCAACTCAAGCCTGATGAGGATTACTCTCCGCAACTTGGAGGAGGTAGAGCACTGCGTTGAAG
Seq A exon
ATCATAAAATGATCATTGCAG
Seq C2 exon
ATAAACCTGTTCACTTCACACCGGCACCTCCTCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF0314610=NtA=PU(84.2=94.1)
A:
PF0314610=NtA=PD(1.6=25.0)
C2:
PF0314610=NtA=PD(10.5=14.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAACCACAAGAACGAACT
R:
CCGGTGTGAAGTGAACAGGTT
Band lengths:
113-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]