GgaEX0028034 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2744173-2767283:-
Coord C1 exon
chr21:2767022-2767283
Coord A exon
chr21:2750723-2750743
Coord C2 exon
chr21:2744173-2744220
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTTGCTTTCTAAAGAAC
3' ss Score
6.7
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGAGAGTGTGGCGTTACCTGAAAGGCAAAGACATCGTCACCCACGAGATCCTCTTGGACGGTGGGAACAAAGTGGTCATCGGTGGCTTCGGGGACCCCTTAATCTGTGACAACCAAGTGTCGACCGGGGACACACGGATATTCTTTGTCAACCCAGCCCCTCAGTACATGTGGCCTGCCCATCGCAACGAGCTGATGCTCAACTCCAGCCTGATGCGGATCACGCTGCGCAACCTGGAGGAGGTGGAGCACTGCGTGGAAG
Seq A exon
AACATAGGAAGCTTCTTGCTG
Seq C2 exon
ACAAGCCCAATAGCTATTTTACCCAGACCCCGCCGACCCCTCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
PF0314610=NtA=FE(68.0=100)
A:
PF0314610=NtA=PD(1.6=25.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCTCAACTCCAGCCTG
R:
GCGGGGTCTGGGTAAAATAGC
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]