DreEX0012279 @ danRer10
Exon Skipping
Gene
ENSDARG00000009336 | aif1l
Description
allograft inflammatory factor 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-9646]
Coordinates
chr5:33949603-33975349:+
Coord C1 exon
chr5:33949603-33949664
Coord A exon
chr5:33958576-33958642
Coord C2 exon
chr5:33973627-33975349
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTCTCTGATTGCAGGAG
3' ss Score
9.2
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCGGAAAAGCCTTCGGGTTGCTCAAAGCTCAGCAGAGGGACAAGCTGGAGGAAATCAATAAG
Seq A exon
GAGTTCATGGAAGATCAGAAGTACAGAGACGAAGAGGACTTGCCTGAAAAGCTGGATTCTTTTAAAA
Seq C2 exon
GGTTATGATGTTTGAAGACAAAGCTAATGGGTCCAGCTGTAAGCCTGATGGGCCTCCACCCAAACGTGACATCACCAGCCTACCATAGACCAGTGGAGATGAATATGGTCGACGTCCCTACATTCGCAAATCCCGTCCATTTAACATTAGGGACTAGGTTTCTATAGCCTTACCTAGAAACTTTTTTTGCCAAGATCCAGGGAAAATCTTAGTTCATAGATGGTCAAACTGAAGAAAAAAAAAAAAGTGAAAGATGTTTATATATTTGCTGTGAAAAAGTCGAAGCGCAGAGTAGCTTTTTATAAGTAAACAAATGTATATATTTATATGAGAAGTGTTTTTGAATAGTGTTTGCAAGCACAAATCTTGTGAGTGAAGTACTAGTGAAGTTTAGTGTACTAAGTTTAAGGTTTATGGGATGACAATTAGCTTGCAAGAGATTTTGCGAATTAAGTTTGCGAAGTAAGATTTTTCATCTTTCCCCAAAGTGTGTGCTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009336_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.413 C2=0.690
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(5.7=23.8)
A:
PF134991=EF-hand_7=PU(21.3=69.6)
C2:
NO
Main Skipping Isoform:
ENSDART00000009500fB1106
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCAAAGCTCAGCAGAGG
R:
TTTGCGAATGTAGGGACGTCG
Band lengths:
175-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]