RnoEX0008168 @ rn6
Exon Skipping
Gene
ENSRNOG00000009951 | Aif1l
Description
allograft inflammatory factor 1-like [Source:RGD Symbol;Acc:1305081]
Coordinates
chr3:9248028-9262322:-
Coord C1 exon
chr3:9262261-9262322
Coord A exon
chr3:9250432-9250498
Coord C2 exon
chr3:9248028-9248069
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTCACCTCTGTAGGAG
3' ss Score
9.44
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGGAAGGCGTTCGGCTTGCTCAAAGCCCGGCAGGAGAAGAGACTGGAGGAGATCAACCGG
Seq A exon
GAGTTCCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTTGCGGCCTTTAAAG
Seq C2 exon
AGAAATATATGGAGTTTGACCTGAACAATGAAGGCGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009951-'2-4,'2-3,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(6.8=28.6)
A:
PF134991=EF-hand_7=FE(25.0=100)
C2:
PF134991=EF-hand_7=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAAGGCGTTCGGCT
R:
AATCTCGCCTTCATTGTTCAGGT
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]