MmuEX0004408 @ mm10
Exon Skipping
Gene
ENSMUSG00000001864 | Aif1l
Description
allograft inflammatory factor 1-like [Source:MGI Symbol;Acc:MGI:1919598]
Coordinates
chr2:31950529-31969792:+
Coord C1 exon
chr2:31950529-31950590
Coord A exon
chr2:31962215-31962281
Coord C2 exon
chr2:31969630-31969792
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTCACCTCTATAGGAG
3' ss Score
9.5
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGGAAGGCGTTCGGTTTGCTCAAAGCCCGGCAGGAGAAGAGGCTCGAGGAGATCAATCGG
Seq A exon
GAGTTCCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTCGCAGCCTTCAAAG
Seq C2 exon
ATCTGATGTCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGGAGGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAATATGATGCTGGGCAAGCGGTCGGCTGTCCTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001864_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(6.8=28.6)
A:
PF134991=EF-hand_7=FE(25.0=100)
C2:
PF134991=EF-hand_7=PD(50.0=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCGTTCGGTTTGCTCAAA
R:
TCGGTAGGAGATGGTGTCACT
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types