DreEX0015260 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31223473-31225141:+
Coord C1 exon
chr21:31223473-31223525
Coord A exon
chr21:31223646-31223708
Coord C2 exon
chr21:31225027-31225141
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATAACTCCACAGAAC
3' ss Score
7.96
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
TGGAGCCATTGCTGGGAATCCCTTCGACATTGACAGAGAACTACTTCGCCAAG
Seq A exon
AACTCAGTTTTGACAGTATCAGTATTAACAGCATGGATGCTACTGGACAGAGGGATTTTGTTG
Seq C2 exon
CTGAGTTTCTCTTCTGGGGATCAATGTGTCTCACGCACCTTAGCAAAATGGCAGAGGATCTGATTTTGTACAGTACGAAGGAGTTCTCCTTTATCAATCTGACTGATGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=PD(8.7=90.9)
C2:
PF0020615=Lyase_1=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCTGGGAATCCCTTCG
R:
GGAGAACTCCTTCGTACTGTACA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]