RnoEX0012259 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30174981-30176465:+
Coord C1 exon
chr12:30174981-30175033
Coord A exon
chr12:30175830-30175892
Coord C2 exon
chr12:30176351-30176465
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCCCTCACCTCCAGAAC
3' ss Score
11.57
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGTTCCTCTGTGCAG
Seq A exon
AACTGAACTTTGGAGCCATTACGCTCAACAGTATGGATGCCACCAGCGAGAGAGACTTCGTGG
Seq C2 exon
CTGAGTTCCTGTTTTGGGCTTCTCTGTGCATGACCCATCTCAGCAGGATGGCAGAAGACCTGATTCTCTACGGTACCAAGGAATTCAACTTTGTGCAGCTCTCCGATGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=FE(7.1=100)
C2:
PF0020615=Lyase_1=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCGGGAGTTCCTCTG
R:
CATCGGAGAGCTGCACAAAGT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]