DreEX0015931 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16811090-16811688:+
Coord C1 exon
chr3:16811090-16811180
Coord A exon
chr3:16811272-16811390
Coord C2 exon
chr3:16811472-16811688
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTGTCCTTTCACAGATC
3' ss Score
13.6
5' ss Seq
CCTGTACGC
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATTTGCAGTTCTGGAGAAAAGCAATGTGTTACAGCTGAACCCTGCTGTTCCTAATGTGTTTACTGGACCGTATCCTGTCGGCATTGACCCA
Seq A exon
ATCTGGAACATTGCCACCAACAAGCTGACGTTTCTGAACTCCTTCAAGATGAAGATGTCAATAATTCTGGGAGTTATACACATGATATTTGGAGTTTCCCTCAGTCTTTTCAATCACCT
Seq C2 exon
GTACTTTCGTAAACCTCTGAACATCTACCTGGGATTTATTCCGGAGATCATCTTCATGGTCAGCCTGTTTGGCTACCTGGTGCTGCTCATTTTTTACAAGTGGATAGCGTATGATGCTAAAAGCTCAAGAGTAGCCCCGAGTCTTCTTATAACCTTCATCAACATGTGCCTCTTCAGCTACAATGATCCCACCAACAAACCGTTTTATACGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTACAGCTGAACCCTGC
R:
AGCTGAAGAGGCACATGTTGA
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]