DreEX0018212 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16022233-16033982:-
Coord C1 exon
chr3:16033915-16033982
Coord A exon
chr3:16030898-16031043
Coord C2 exon
chr3:16022233-16022313
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCATGGGTCCCGTAGCTG
3' ss Score
6.11
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAG
Seq A exon
CTGACTTGTCCTCGGGGCTTTATGACGATGCTTTGGATTCGGATGTTGAGGAGGCGGAGACTGCCGACACCCGCGACCATAAGGGTGTGGGCGGAAGTGTCACCTCCCCTCAAGGCAACCTGCCCCGCCTCCCTTTCTTTAAGAAG
Seq C2 exon
ATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.728 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.2=55.6)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGTGGAAGCTCTAGCC
R:
TCATAGCCTTTAAGGGACGGC
Band lengths:
146-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]