GgaEX1012545 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4112265-4113832:-
Coord C1 exon
chr27:4113756-4113832
Coord A exon
chr27:4113264-4113409
Coord C2 exon
chr27:4112265-4112345
Length
146 bp
Sequences
Splice sites
3' ss Seq
CGGCCCCGGCGCGTCCCCAGGTG
3' ss Score
7.74
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CAAATCGGGTGACAACTCCAGCTCCAGCCTTGGCGACGTGGTGACGGGGACGCGCAGGCCCACCCCTCCGGCCAGTG
Seq A exon
GTGCCCTGGACACACCTAGCTTTGCCTTTGAGCCCGATGAGTTAGAGGAGGAGGAGGCTGCGGAGACCCACTGCTCCCCTAAGAGTAGTGTGAGCAGTGTCACCACCCCCCCCGCCCACTCCAAGCGCATCCCCTTCTTTAGGAAG
Seq C2 exon
GCTGAGCACGTGCCGCCCTACGATGTGGTTCCCTCCATGCGGCCCATCATCCTGGTGGGGCCGTCGTTGAAGGGCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.905 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGGGTGACAACTCCAGC
R:
CTCGTAGCCCTTCAACGACG
Band lengths:
157-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]