DreEX0018229 @ danRer10
Exon Skipping
Gene
ENSDARG00000055565 | cacnb2b
Description
calcium channel, voltage-dependent, beta 2b [Source:ZFIN;Acc:ZDB-GENE-050208-129]
Coordinates
chr2:31524494-31528768:+
Coord C1 exon
chr2:31524494-31524667
Coord A exon
chr2:31525514-31525538
Coord C2 exon
chr2:31528315-31528768
Length
25 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTTGGACATTTAAAGAAG
3' ss Score
1.29
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGATGTTTGATGTCATCTTGGACGAGAACCAGCTGTCAGATGCCTGTGAACACATTGCTGATTACCTGGAGGCCTATTGGAGAGCCACACACCCTCCGGAAATGGAGCCTCCAAACCCCATGCTGGAGAAACTGGCAGAAAACACACTCCCCACCAGCCCCACACCTGCTAAG
Seq A exon
AAGACTTGAACTTAAAGGACCTCTG
Seq C2 exon
GACGAACAGAAAAGCAAGAAAACGGCCGCCACCAAAAGAAAAGGATCTCTAGAGCACCAGCAGGAGCATCAGCCCCAAGCTCAGGAGACGAGAGAAGAGGAAGATGAGGAGGAAGAAGAGGAAGTGCAAGAGGAGGCTGAGGAGGAGGAGAGGCTTCTTCGCAGTGAGCCAAAGAGACACAGCCATCATCATCACCACCACCATCATCATCACAACCGCTCGGGCACCAGCCGACCGCCTGAGACCCAGAACAAACACCAGCAGCACATGCGCCAACCACAGCCTGCCGACATGGAGCTACTCCCCGCTAGAAACACTTCATACGCTTCAGAACCCCGGAGCAGGCGCATGATCCCTGGTGAAGGTGACCCGGACCAAACCGAGGTCTACCAAAACAGGACTACAACTCAAAGGGACCATAATCACCAACATCACAACCATCACCATCGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055565_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.6=43.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGGAGAAACTGGCAGA
R:
CTCCTGCTGGTGCTCTAGAGA
Band lengths:
121-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]