DreEX0018249 @ danRer10
Exon Skipping
Gene
ENSDARG00000062174 | cacnb4b
Description
calcium channel, voltage-dependent, beta 4b subunit [Source:ZFIN;Acc:ZDB-GENE-060421-7907]
Coordinates
chr6:13980526-13992078:-
Coord C1 exon
chr6:13991951-13992078
Coord A exon
chr6:13980791-13980840
Coord C2 exon
chr6:13980526-13980545
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGCTCATTTCTTTAGTAA
3' ss Score
6.67
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGTTTAATAATGACTGGTGGATTGGGAGGCTGGTAAAAGAAGGCTGTGAGATTGGCTTTATCCCCAGTCCCCTGAAGCTGGAGAATATCAGAGCACAGCTGGAACAGAAGAAAAGCAGAGTACAAGG
Seq A exon
TAAGTCCAGTGGAAGCTCCTCCTCCAGTTTGGGGGATGTGATGTCATCAG
Seq C2 exon
GCAAGCAGAAACAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062174_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.944 C2=0.670
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(52.4=51.2)
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]