DreEX0019306 @ danRer10
Exon Skipping
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32669283-32672386:-
Coord C1 exon
chr5:32672261-32672386
Coord A exon
chr5:32669437-32669557
Coord C2 exon
chr5:32669283-32669359
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTTTATTTACCCAGGTC
3' ss Score
8.44
5' ss Seq
TCGGTAAAA
5' ss Score
5.48
Exon sequences
Seq C1 exon
AGGGAAGGCCGTGGTCCTGCTCTGACCAGTGCTGACTGGGTTTTGTCTCCTGAAGAGTTGGCCAGTAAATTTACTTCTCGAACCAAAGCCATTGTTATCAACACCCCTAATAATCCTCTTGGCAAG
Seq A exon
GTCTATCAATGGGAGGAACTTCAGGTTATTGCAGACTTATGCATTAAACATGACGTCATTTGCATTAGTGATGAGGTGTACGAGTGGCTCACATATGATGGAGCGAAGCATGTAAAGATCG
Seq C2 exon
CCAGTCTGCCAGGTATGTGGGAACGTACTGTCACCATCGGCAGTGCAGGAAAGACCTTCAGTGCCACAGGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645-'8-10,'8-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.6=100)
A:
PF0015516=Aminotran_1_2=FE(10.4=100)
C2:
PF0015516=Aminotran_1_2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCCGTGGTCCTGCTC
R:
CATCCTGTGGCACTGAAGGTC
Band lengths:
196-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]