DreEX0021051 @ danRer10
Exon Skipping
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8873175-8879254:-
Coord C1 exon
chr19:8879081-8879254
Coord A exon
chr19:8876466-8876583
Coord C2 exon
chr19:8873175-8873293
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATACTGTCTTCCATCTGTAGGAC
3' ss Score
11.08
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GATGTTGTCCAGGCTGAGCGAGTGGTTCTGGAACGAGAGGCTGTGGTTTCCTGGAGACCTGGGCTGGGCTGACCTGGAGGATCGGGACGGTGTCACCTATGCCAAAACAGCAGACCTCTGGGTGACCCTGCCCATTGCACTCACCTTCCTCATCATACGACAAGTTTTCGAGAG
Seq A exon
GACGGTGGCCATTCGTCTGGCCACAGCTCTGGGTGTGAAGGAGAAAGTTCGAGTGCGAGCGGCGCACAACCCTATGCTGGAGGCTTACTTCAGGAGCACAAGTAAAAGCCCCAAACAG
Seq C2 exon
GCTGAAGTGGAGAGTTTAGTGAAAAAGACGGGGCACACGGAGAGAGAGATCCACAGATGGTTCCGGCGACGAAGGAACCAAGAGCGACCAAACCAGCTGAAGAAGTTCAGAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(46.6=67.5)
C2:
PF0004624=Homeobox=PD(50.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGAACGAGAGGCTGTG
R:
TGGTTTGGTCGCTCTTGGTTC
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]