DreEX0023317 @ danRer10
Exon Skipping
Gene
ENSDARG00000052063 | col4a5
Description
collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
Coordinates
chr7:50896171-50902087:+
Coord C1 exon
chr7:50896171-50896356
Coord A exon
chr7:50899428-50899436
Coord C2 exon
chr7:50901990-50902087
Length
9 bp
Sequences
Splice sites
3' ss Seq
ATGTCATGGGATCATTGCAGGCC
3' ss Score
5.17
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCGCTAAAGGAGATCCTGGTTTTCCGGGTCCTGCCGGTAGTGCTGGATTTCCTGGTCCAAAGGGTGATGCAGGATTTCCTGGCTTGCCTGGTCAGATTGGTTCTGTAGGACCACCTGGGCCTCCAGGCTTGCCACTGCAGGGACCTAAAGGTATCCAAGGTCCACCTGGTCCCCCCGGAAGAGCTG
Seq A exon
GCCCGGCAG
Seq C2 exon
GTAGCGGAGGAGTGAAGGGTGAGAAGGGTTTGCCTGGAGTTCCTGGGACGCCTGGAGAAGCAGGACAGAAAGGAGATTATGGTTCTCCTGGGTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052063-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(70.8=73.0),PF0139113=Collagen=PU(29.0=28.6)
A:
NO
C2:
PF0139113=Collagen=FE(51.6=100),PF0139113=Collagen=PU(7.6=15.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGCAGGGACCTAAAG
R:
CTCCAGGCAAACCCTTCTCAC
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]