GgaEX0029114 @ galGal4
Exon Skipping
Gene
ENSGALG00000008141 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chr4:13871628-13876118:-
Coord C1 exon
chr4:13875933-13876118
Coord A exon
chr4:13873945-13873953
Coord C2 exon
chr4:13871628-13871636
Length
9 bp
Sequences
Splice sites
3' ss Seq
3' ss Score
5' ss Seq
5' ss Score
Exon sequences
Seq C1 exon
GGCAAAAAGGTGAATTGGGGTTACCTGGCCCACCAGGACCCCCTGGACTTCCAGGTCTGAAGGGAGAACCAGGTTTCCAGGGATTCCCTGGCCTACAGGGCCCACCAGGTCCACCAGGATTACCAGGGCCCCCTCTGGAAGGTCCTAAAGGTAGCCCTGGCCCACCAGGTGTTCCAGGAAGACCAG
Seq A exon
GTCCCTCAG
Seq C2 exon
GTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141-MICROEX2-1/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(76.7=73.0),PF0139113=Collagen=PU(32.8=30.2)
A:
NA
C2:
PF0139113=Collagen=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]