GgaEX0029114 @ galGal3
Exon Skipping
Gene
ENSGALG00000008141 | COL4A5
Description
NA
Coordinates
chr4:14015896-14020656:-
Coord C1 exon
chr4:14020471-14020656
Coord A exon
chr4:14018213-14018221
Coord C2 exon
chr4:14015896-14015904
Length
9 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCCCCTACTCCCAGGTC
3' ss Score
7.85
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGCAAAAAGGTGAATTGGGGTTACCTGGCCCACCAGGACCCCCTGGACTTCCAGGTCTGAAGGGAGAACCAGGTTTCCAGGGATTCCCTGGCCTACAGGGCCCACCAGGTCCACCAGGATTACCAGGGCCCCCTCTGGAAGGTCCTAAAGGTAGCCCTGGCCCACCAGGTGTTCCAGGAAGACCAG
Seq A exon
GTCCCTCAG
Seq C2 exon
GTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.3=4.5),PF0139113=Collagen=PD(77.8=74.2),PF0139113=Collagen=PU(37.7=39.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]