GgaINT0068177 @ galGal3
Intron Retention
Gene
ENSGALG00000008141 | COL4A5
Description
NA
Coordinates
chr4:14014498-14020656:-
Coord C1 exon
chr4:14020454-14020656
Coord A exon
chr4:14014633-14020453
Coord C2 exon
chr4:14014498-14014632
Length
5821 bp
Sequences
Splice sites
5' ss Seq
CATGTCTGT
5' ss Score
-1.62
3' ss Seq
TATTTGTTCCACGATGTTAAGGT
3' ss Score
-3.88
Exon sequences
Seq C1 exon
GGCAAAAAGGTGAATTGGGGTTACCTGGCCCACCAGGACCCCCTGGACTTCCAGGTCTGAAGGGAGAACCAGGTTTCCAGGGATTCCCTGGCCTACAGGGCCCACCAGGTCCACCAGGATTACCAGGGCCCCCTCTGGAAGGTCCTAAAGGTAGCCCTGGCCCACCAGGTGTTCCAGGAAGACCAGGTAAGGGCATGATCCAT
Seq A exon
GTCTGTCATGATTTACCGGTACTTTTGTTTTTTTGCTGATAGGTTATCAGTTTTTGGACTTCCTCAATTTATTTGGATGGATAAGTTCAAGACCCATGGAATAAGTTTTAATCGTTTATGGGCAACCAGAGAATTTTGTTGCCAAAAGTAACAGTATTTAAAAATAAAACATCTTCAGTTTCTATTAATTTCTGATACCTGGCAGCAAAAATCCAATGTTGTAATAAATGTGAAATTCTCCGCATGCTGTCACAGAAATCACCTAGCGAGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAGCACGTGTTTCTCACTGCAGATATCAGAGGAGAATCTAGATTTGAAATAAAGATTTGGAAAGAATTTGACATTCTTTAAAAACAATAATAATAAAAAAAGTGAACTGGATAAGCATCTCCTGCTGTGTTTGTAATACAAATACTGACTGAGATTCTGTGCTCTGCTGTAGCATTGGTGTTTTGATGGAAGTTCTAGTCGTGGTTACACTTCTCTATAATTGAGTGGTTACTGATTGAAATCAGCTGGGGAAGAAACAGTAGTGCTGGGATATGTTTTGTGTAGTTTTATGAGCATCGAGGGGAAAAAACAATCATTGAGGTTCTGCTCAGCCATGTTCCCTCTCTTTTTCTCTTTCTTTCTCTTATTTCTATTTTTGTTGCATGCAATGTATAAAGTGATGCATTTGTTTCGCTCAGTTATGCATGAACTAATGTGGACAAACCAAACTATTATTGCAGTTCTGGTACAATCAGCACTCCAACCTTTTGTTTCAAGTGAGAATAGTCTATTGTTGAACTCTGATTTTTATAATCTTTCAGATAAGGCAGCTAGTCATAAAAGTAGCTGTTTGGCTGTCAAATTACTCCCTTTCTTGGGACATAAATAAAAACAGAAGTTGTATATATATATTGTCTGTTGTTGACTTCTGGGTTTGTGCTATGAGTAGTAAAAGTGATGAGGTCAAACATGATAAAACACTGACTTCAGCTGAGTTGCCTAAAAACCAAATTTGGATAGATGATGCTGAGAGGGATTTATTCATCAAGAATAAAATGAAGCCAATCTCCAGGGCAACGTAACACTGCTGTTATTCCATATGTCAATTTTTCATTGCAATGAATAATAATAGTTTGGTTTTTTGCATACTGTATGTGAAGAAATATTGAGCTAAATCTAAAAAGAAAGGTTTAGTTGAATATGTTGGTTTGTTGATATTTCTAACAATTTTGATGTTTTTCCCCTTGTTCTAATGATGACCTTGGTGAACTCTGACCCCCTACTCCCAGGTCCCTCAGGTTAGCCCCTTAACTCCAAAATAATAACTTTGCATGAAGATGAAAATATGTACTTTTTTAGTGTCTGAATGTAGATATGCTGAGTCATTTTTCTTACATACCTTTTAATTTGAGGGAGAAAAGAAGTTAGGCTTTCAAAACATAGGGTTCCATGTTGTTGTAGGTCTGACTGACACTGGAAGGACTGCTTTCCTTCTGGTGAAAGTTCACATGGATCCAGATTTACAAGGCTTTTATGGTATCCCAACTGTGAAATTTACTTTAGTGTATTTATTCCCAGAAGAGGTGAAAAAAATATATACTACCTTTCCTCTTTACGTTAAAACAAACAAACAAACCAAAAAACAGCATATTTTGCTGTCCTCCCCTACCTTTGCTGCATAATTGTTTTGTAGCTTGGACAACTGACAGTATTCATTTTTGTAACACCTGCTGAGGATGATTTTTGGATGCTCTGATGTGATGTAATTTTAGTAACACGTTCCTTTTATACCAAGAGCCTCCGTAGGAGCACATGCAGTTACACAGAAAATAGAAATGCTTTATGTTCCCAGCATAGAGCATTTTAACTTTCTAGTGCAGAGAAATCCTTATTTCCATTGCTTCGTTTCACCAGCACGTTTGGAGGAAATTAGGAAAACTCTTCCTTCACCGTGGATTCATTTAACTGAAACGAGGCACACTGGCTTTTCTTACCGCTAGGGAGGAGGAGCAGGACTGGTAATTTTCACAAGCTTTTCTGAGCTCTAGCAATCAGCACATAGCACAGGCCAGCTTTTGGGGAGACCTCACCTTTTGTGCCTAGATTGAAAATGACTTAGTATATCTACCTAATAATAATGAAGTCTTTAAGTTTTGCTATGATGACTTCTACGAAGCAAAGAACTATCATCAAAATTCAAGAAGAGAAGTCTTTAGTCCGCTGTGCTAAGCACTGTGGGGTAGCAAATGTGGTAGCCCCTGAGGTTTGAAAACTGAAATATATATCTAGCATTATGCAGCCATGGAAATAATACAAAATATATATATGTGTGTGTGTGTGGCTTTGCCTTTTAATTAAAACATGGTCACACAAATAGTAACCACATTGTCAAAGAGAATTAGTATGATGGCTATGCTGAGAAGAACTTACCAATTGCTTCATATTTTGTTCCACTCTGAGACTGCACCCAGACAGCATTCAATAATCAACAAATATGGGAAAAATGCATAAATCGTAGCAAAACTTATTTAATAGTGAAAGAAAGTTAATGAGTACTGAACAGCAACAATGAAATGTACATGTCATTGTTTTTAACAGCTGTATTACAACTAGTATTTAAAATGATTTACCAAATATGTAAGAAATAGTACACCAAGGTAAACCTGATATGTATTTATTGTAGTTTTTAGCTGCAAATTGCATGGTTATACATTGATATACTTAAATCATTTCACTGACATGAAAGATGCAAGTGATGCAGGAGCTGCAATACGTATTAATTCAGGAGGACCAGCTTACCTTTAAACAAAAGGATATTTAAGTGATTTTCCTACTGATGACATTACATGCCATTTACCATAATCACTTTTAACAGGCAAATTATCATCTTGAGGTATTTTTATTAAGAAAAATCAATGCCAGCAGTAAATACAAGTTCTGATTTTCTAAGTTTTTGCTTTTTGCTTTTGTATTTTTGCTTATAGCACTTAAAACCATTTTAATCCATGTCAATTCTGGTTACTATTTTGGGAAGTACATGCCTGCTTTTCAGTCCTAGGATTTTCTTCACAGATAACTTCCACTCTTACCTGAGAAGTAGCGTAAAGTCCTTATATCAGTCACACTCCTGCCCTGCCCAAAGCACAATTTTCCTCAAACATAAGCTGTCATTTGCAGTGTACCTTGGTATTTGCCAAGCTCCAGGCCCTATGAGTGATGAATATTGTCAGTGAAATGGTTTCATAGTGTAAAATGCATTGTGAGTAGGACTAACCAGGCACAGGCCTCAGCTGTAATGTTAAAGCAATAACACGTTTAGTACAGCTTTTAAGTTTGTCATTAAATGAAGAGTGTCAAATTAGTCCTAGTAGAGCCAAGTCACCAGAATAGCTTGTATCTGAAAATACATATCGTGTACTCATGTATGGTCTTATGCATGCATGTGGATTATATTCTAAATACAAAATATGCTGGTGAAATGGGTTGATGTGTAGTGTATATGCTGTCATCTGTACTGTTTCTAACTAGTAATCTTGTTTTGTACTGTGTGATGTCTGACCCTTCTAACATCGATCATTGGGCTTTGGTGAACTCTGATCCTTCCAGGTCCTCCAGGTTAGACTCTTAACTCAGTCACTTTATTTTACTGCGTTGCATTTGATATAAAAGAAAGGATGTTTTCCTGTGATTCTGTAATTATCTTTTTAAGGACTGTGGTTACCCTGCAAGTTGTGTGCTTTTGTTCAGCATGCCTCATGGTAGATGGTAGCCTGTTGTTGTTTTGCATGTGTACAGTACCGGACCAGTTAAAAAGAACAAAATGAACACAAAAGCCTCTTGCATGATGGGATGTTTTCTGTAGCTGAAACGGCAATGGGATGTATGTGAAATACAGTACAAAATTGCTCCTATTTTAAGAAGAAAAATTTGGAAATCTTCACTCAGATTTGCATGCAGAAGTACAGCTCATCAAGTTTATCCACTGAATAGAGACAGTGAGGATTTCAAAGAGCATTCTCAGAGGTTTCAGAAGAACTGAAAATCCAGCACACTGCTACGTGTTATTAATTTGTTGTACCACGGGGGAGAATGTCATAGCACTGTCCTGCAAAGAGATCCTTTTGTTAATCCAATTAGGAGATCTAACATGCAAAGTGTTTTTAGCTGTTGCTGTGTTTGCTCACGGTTTGCTTTGCCATGAGTTACCTTCTATTTAGATGATAAAGGTGCACGGTCTCATTTTTCAGTGCTCAGAACAGCTAGGCTTCATTTAAATTCACTGTTCTCTTTTGGTTTAATGTGGCTGTTGCAAAGAGAAAATATTTAAAGATTGGCTCAGTTCCTGTTAGATTTACATAGCATAATTCTACTAAACACAGACAAACCAGCTGGAGGGTCACTGAATATAAAGTGCCTGCATTAGTATTTAGGTAAGACTGAATAAGGGGCTTCCTCCTGCTGAGCAGTCAGTAAATAAGAGATAGTAGGCTTCTCTGTAGGTATTGGAAACAGCAAAAAGCAGCAATATTTTTGTGTTAGTGTCTATTAACATAGCACTTAAGAGATGGTGAATGCAATGCAGGACAGCAGAGGGTATATTTGTACCATCTAATTTGGGTTTTCTTGGCTCCTACTAAAAGGTAGCTGTCTGGTCACTGGTAAGTTCCTAACATAGGTGATTTGCACTGCTGCCTAGAAAGGCCTGCTTCTCTTTATCAGCTGGATGAGGAGCCTTGGTTCCTGATTTGGGTAGTACAAATAAACCCGTTTGTTTTCTCTTTAGTTAGGGTGTTTTATTTTGTTTTTACACTGAAGGCACAGTCTTGTGGAGAACAGTTGACATGTACTGATACGTCTGTATTTGTTCCACGATGTTAA
Seq C2 exon
GGTTCACCGGGCCCAGAAGGTCCACGAGGGCCACCAGGCAGTGGGGGACTCAAAGGGGAAAAAGGGAACCCAGGACAGCCTGGCCCACCTGGCCTGACTGGTCAAAAGGGAGACCAAGGACCACCTGGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141:ENSGALT00000013221:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(76.7=67.6),PF0139113=Collagen=WD(100=86.8)
A:
NA
C2:
PF0139113=Collagen=PU(3.0=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]