BtaEX0009706 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014575 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:61800231-61809153:+
Coord C1 exon
chrX:61800231-61800416
Coord A exon
chrX:61802138-61802146
Coord C2 exon
chrX:61809011-61809153
Length
9 bp
Sequences
Splice sites
3' ss Seq
GAACTTTGATCCCTATCCAGGTC
3' ss Score
7.23
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GTCAAAAGGGTGATGAAGGATTACCTGGCATTCCAGGAAACCCTGGCCTTCCAGGTCCAAAGGGTGAACCAGGCTTTCATGGTTTCCCTGGTCTGCAGGGTCCCCCAGGCCCTCCTGGTTCTCCAGGTCCAGCTCTGGAAGGCCCTAAAGGCAGCCCTGGACCCCAAGGTCCTCCTGGGAGACCAG
Seq A exon
GTCCTACAG
Seq C2 exon
ATTATCAAGGTCCACCAGGTCCAGAAGGTCCCCGGGGTCTACCTGGAAGTGGGGCTATTAAAGGAGAAAGAGGTAACCCAGGCCAACCTGGGCAACCTGGTTTGCCTGGTTTGAAAGGTGATCAAGGTCCTCCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014575-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(76.7=73.0)
A:
NO
C2:
PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTCCAGGTCCAGCTCT
R:
CTTCTGGACCTGGTGGACCTT
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development