DreEX0023480 @ danRer10
Exon Skipping
Gene
ENSDARG00000095915 | col6a3
Description
collagen, type VI, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070501-8]
Coordinates
chr9:24175015-24179574:-
Coord C1 exon
chr9:24179466-24179574
Coord A exon
chr9:24176649-24177242
Coord C2 exon
chr9:24175015-24175608
Length
594 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCACTTCTTCAAAGCCC
3' ss Score
5.67
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTCTATTCTGACACTTTGGTGGACTATGGGGAAGAGGCAGTTATTACTTTATGCCCTCTGGGGTGTAATGGTTTTTGGCCTATTCCCAAAACTTGAAGCTCAAGATG
Seq A exon
CCCCTGGGACAGCTGACCTTGTACTCTTAATTGACGGATCAGAAAACGTTGGAGCTGCCAACTTCCCCCTCATCAGTGGTTTGGCTGCTCAAGTGATTGAGGGGCTTGCTGTGGGCAGGGATGCAATTCGTGTAGCCCTTGTGCTTTATGGTGCTGACCCTGAGATTAAGTTCTATCTCAATAGCTATGACAACAGACAGAGTGTCCTCAGTGCTATCCGGGGGCTTAAATACCCTGGTGGGGAGGCAAATCTGGGGGCTGCATTGCAAGAGGTGGCAGACAGTCTGTTGGGCGAAGACGCAGGAGGCAGGGCAGAGGAAGGGGTCCCCCAGGCACTGGTGGTGATCAGTGCTGGGGAATCCGCTGATGATGTCAGTCAGAGCGGCAGGGCACTAAAACAGGACAGTGTGTACATCTTTGGTATTGCTGCTGGTGATTCTGCCACTGCCCAACTGGAAGCTATTGCTACAGACAAAAGCTTTGTTCTGTCGGCTCCTGATGTCAGAACAGTCTCAAGCATGGGTGACCAGATACTGCCATACATTAATGGGGTTGCCCAGCGCAACATTGTGATTCAAACAGATTTCACAGAAG
Seq C2 exon
CTTTGGCTGTTGGGCAGAGAGATGTCATTTTTCTCATAGACAGTAGCTTGGGCAGCATCGGAATCAATGTAGCGCGTGAAGTCATCAGAAGGTTTATTGAGTCCGTACCAATTGGCCCTGATCAGGTGCAGATTGGAGTGGCCATGTTTTCCACTACCCCAAAGATGGAGATTGATCTAAACTCATTCAGTTCAAAAGAGGCTTTGATCTCTGCCCTTGTGAAAATAAAACCCAAACCTTCAGTCGAAATTAACATTGGTGCAGCCCTGGATTTTGTGAGGACCAACATGTTCAGAGCTGAGAGGGGGAGTCGCATTCAAGATGGAGTGCCACAGCTTTTATTGCTCCTGACCAGTAAAAAATCCAAAGACAGTGTCCAACAGCCAGCTGAAGCCCTTCGACAAATGGGTGTTCTGACATTGGCTGCAGGTACCAGAGCTGCTCAGGAGGCAGAGCTCAAGGAAATAGCTTTTGATGACAGTGTGGTTTTCATGTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095915_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=86.9)
C2:
PF0009223=VWA=WD(100=88.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTATGGGGAAGAGGCAGT
R:
CCAGGGCTGCACCAATGTTAA
Band lengths:
357-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]