RnoEX0003927 @ rn6
Exon Skipping
Gene
ENSRNOG00000019648 | AABR07068316.1
Description
collagen type VI alpha 3 chain [Source:NCBI gene;Acc:367313]
Coordinates
chr9:97975281-97989325:-
Coord C1 exon
chr9:97989210-97989325
Coord A exon
chr9:97981212-97981814
Coord C2 exon
chr9:97975281-97975865
Length
603 bp
Sequences
Splice sites
3' ss Seq
TGCATTTCTTTCTTTTAAAGCAC
3' ss Score
8.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCACACTTGGTGCTTAGACATTCAAAATGAGGAAACACCGGCATCTGCCCCTAGTGGCTGTCTTTAGCCTTCTCCTCTCTGGCATCACCATGACTCATGCCCAACAACAATCAG
Seq A exon
CACAAGACTCAGCTGACATTATTTTCCTTATTGATGGATCACAGAACACCGGAAAGGCCAATTTCGATGTCATTCGAGACTTCCTTGTAAATGTCCTTGAGAGACTTTCAGTTGGAAATCAGCAGGTCCGAGTGGGGGTGGTACAGTATAGTGACGAGCCCAGAACCATGTTCTCCTTGGATAGCTACCCCTCCAAGGCTGCAGTTCTGGATGCTGTCAAAAGGCTCAGCTTTGCTGGTGGGGAGTTGGCCAATATAGGCCAGGCCCTTGACTTTGTAGTAGAGAATCACTTCACTCGGACAGGTGGCAGCCGTGTGGAGGAAGGGGTCCCCCAGGTGCTGGTCCTCATAAGTGCTGGGCCTTCTAGTGATGAGATTCGAGATGCAGTGGTAGCTCTGAAGCAGGGTAGTGTGTTCTCATTTGGCCTCGGAGCCCAGGCTGCCTCCAGGGTAGAGCTTCAGCACATAGCTACCGATGACAACTTGGTGTTTACTGTCCCGGAATTCCGTAGCTTTGGGGACCTCCAGGAGCAATTACTGCCATACCTTGTTGGTGTGGCCCAAAGGCACTTTGTCTTGCAACCACCAGCTATTGTCACACAAG
Seq C2 exon
TCATGGAAGTCAACAAGAGGGACATAGTCTTCCTGGTGGATGGTTCCTCCAGCCTGGGACAGGCTAACTTCAATGCCATCCGAGACTTCATTAGCAGAGTCATCCAGAGGCTGGAAATTGGTCAGGACCTGGTTCAGGTATCAGTGGCTCAGTATGCAGACACCGTCAAGCCCGAGTTCTATTTAAATACCTACTCTACCAAGAAGGATGCTATAACCACTGTGCGGAAGATGAAGGCCCTGGAAGGCTCAGCCCTGTACACGGGGTCTGCTCTGGACTTTGTTCGAAACAACCTCTTCACTAGCTCAGCCGGCCACAGGGCCGCTGAGGGGGTTCCGAAGCTCCTGGTGCTAATCACAGGTGGTAAGTCACTCGATGATGTCAGCCAGGCTGCCCAGGAGCTGCAGAAAGGCAGCATCATGGCCTTGGTCATTGGCAGCAGGGCCGCCGATGAAGACGAGCTGAAAGAGATCGCTTTCGACTCCTCCCTGGTCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019648_MULTIEX1-2/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCACCATGACTCATGC
R:
CGGCTGAGCTAGTGAAGAGGT
Band lengths:
347-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]