DreEX0024153 @ danRer10
Exon Skipping
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23495533-23499613:-
Coord C1 exon
chr22:23499418-23499613
Coord A exon
chr22:23497351-23497493
Coord C2 exon
chr22:23495533-23495715
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTATAGCCTATATGTTGTAGCTA
3' ss Score
1.55
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAGCAGCTGTGAGCTGGAGATTGATGAGTGTCAGTCACAGCCCTGTCTCCACGGCGCCAGTTGCCATGACCACATCAATGGCTTCACGTGCACATGCCTGGCGGGTTTCCAGGGCGAGAGCTGTGAAATCAACATCGACGAGTGCCGTGACCAGCCATGCCAAAACGGGGCTCTGTGTGTGGATGAAATCAATAG
Seq A exon
CTACCGCTGTGACTGCTCACAGACTGCTAACTTCACTGGTGTTGACTGTGAGATCCCGCCTCCGCCCTGCTGGTCTCAACCCTGCCTCAACAGCGCCCTCTGTGAGAATCAACAGGAGAACTACACCTGCAACTGCTGGCCAG
Seq C2 exon
GGTTTGAAGGGCGTAACTGTGAGGTAGACGTCAGTGAATGTGAAAGCAATCCCTGTGTGAATGAAGGCATTTGCATGGAGCTTTCTTGGAAAACACTTTACGGTACTGAGCCCCTGTTTACAGCTAGATACAATCCCAGACTTGCTTCCGGGTTCATCTGCAAGTGTCCGCCAGGATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506-'5-7,'5-4,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(51.5=25.8)
A:
PF0000822=EGF=PD(45.5=30.6),PF0000822=EGF=PU(81.8=55.1)
C2:
PF0000822=EGF=PD(15.2=8.1),PF0000822=EGF=PU(94.1=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGCCATGACCACATCA
R:
ACAGGGGCTCAGTACCGTAAA
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]