RnoEX0024403 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56395250-56413636:-
Coord C1 exon
chr13:56413441-56413636
Coord A exon
chr13:56408146-56408285
Coord C2 exon
chr13:56395250-56395432
Length
140 bp
Sequences
Splice sites
3' ss Seq
AAATTTCATTTGCTCTCTAGTTA
3' ss Score
4.86
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCGTGAACTGCGAGTTGGAGATTGATGAATGCGGATCCCAGCCATGTCTACATGGTGCCACGTGTCGGGACGCCCTTGGGGGCTACTTCTGCGACTGTGCACCTGGATTCCTTGGAGACCACTGTGAACTCAACTTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGCGTAGATGGAAGAAACAG
Seq A exon
TTACCACTGTGACTGCACGGGTAGTGGATTCAGAGGGATCCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAATGATGCGACATGTGAAGACACTGTTGACAGCTATATTTGTCACTGCTGGCCTG
Seq C2 exon
GATACACAGGTGCTCTGTGTGAGACGGACATAAATGAATGCAGTAGCAACCCCTGCCAATTTGGGGGGGAATGTGCCGAGCTGTCCTCACAGGATCTATATGGAAACACCGCTGGCCTGCCTTCCTCCTTCAGCTACCTTGGAGCCTCGGGCTATGTTTGTATCTGTCTGCCTGGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903-'4-5,'4-4,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
A:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
C2:
PF0000822=EGF=PD(16.1=8.1),PF126612=hEGF=PU(69.2=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTTCTGCGACTGTGCACC
R:
TAGCTGAAGGAGGAAGGCAGG
Band lengths:
250-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]