DreEX0024200 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26840574-26888731:+
Coord C1 exon
chr22:26840574-26841144
Coord A exon
chr22:26876421-26877043
Coord C2 exon
chr22:26888576-26888731
Length
623 bp
Sequences
Splice sites
3' ss Seq
CCCGCTCTTTTTTTCCTCAGAGT
3' ss Score
11.23
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCAAAAATATCTCATTTTTATGCAACCGTGCATTTTCACAAGAAGCCAGAGGATTTTTGCACGGAAAAAATTGACGTCAGAAAATGGATCGCGTGCCGTTGCAAAATTAACGACGCTCGCGCGCGCAGACTCCTATGGTTATTTTATTTGGGATTTTGCGTTGAATTCGCGGAAAGGAGGCGTTTTCTCTCGGTAATATAACGATGATAATGTGGGTGTTGGGTGTTGGATTATCATGGGGTGAATGGTGGTGGCGACGCGGGGCGCTGTTGCTGCTTTTTTGAGAAAATCCTTCGCCAAGCCGCTCCACACTCCCCAAGTCTTTCAAAAGTAAGGTAATATCTGTTTTTCCGACGAAAGGATCCTTCACTTTGCATTTTTGACCCACAACACTCAGCCAGAAGCTCACTTGAATCGCAATGGCTGAAAATGTGCTCGACGTCGGCCCTCCCAATGCGAAGCGGGCGAAGCTGACAGCACCTGCTCCAGACGCACCAG
Seq A exon
AGTTGGGTTCACTTTCATGGGATGACCTGGAGAACGATCTTCCAGATGAGCTGATTCCTAACGGAGACCTGGGGCTGATGTCCTTGCCCTCAAACGGCGGGGCTGCAGGTACGGGCGCTCACGGCCCCATGGTCCCCGACGCCGCTGCCAAGCACAAGCAACTCTCGGAACTCCTGCGGCCGGGAAGCAGCGCTGGCATGAACTCTGTCAGCCCACAGCCTGGCGGCATCGGACCTCAGCTTGGTGGGCTCGGAAAGAGTCCCCTAGGCCAAGGCTCCCCTTCCCACCCTTCCCAAACACAAAAACCAGGGGGCACTCCTGGGACGCAGGGCAATAACGCCGGATCAGCTGGCATGGGATTTAACCAGGGTATGCTGAACAGCGGCATGATGGGACAGAATGCTGGTGCTCAAGGAGGTCAGGTGATCAATGGAGCTCTTGGGACTGTAGGCCGCGGTCGAGGCGTGCAGGGAATGTACCAGGGTGCTGCCATGCAGGTTGCATCTTCTGTTGGAGCGGGAGGAGGAGTGGGGGCGGCGGCACCTGGAGGAGCAGGAAGTGTCCTAGCGGAAACGCTCACACAAGGGGCACAGCAGATGGGCATCAACGCTCAGCAGGCCAAG
Seq C2 exon
ATGGGCATGGCAGGTGGCAACAGTCCATTTGGGCAGTACCAGGCTGGAGGTCAACAACTGGGCACGAACGCACAGAATAAAGGCGCCCTTCCCAACAGCCTCCCCCCATTTCCAACTGACCTAAAGGGGGCGACTGTCACCAGCGTGCCAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.918 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGTTGGGTGTTGGATT
R:
TTGTTGACCTCCAGCCTGGTA
Band lengths:
344-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]