BtaEX6108227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3114512-3169185:-
Coord C1 exon
chr25:3169053-3169185
Coord A exon
chr25:3143570-3144282
Coord C2 exon
chr25:3114512-3114688
Length
713 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTTTCATTTCTAGATT
3' ss Score
11.81
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCCGACCCGGCCGCCCGCGCTCGGGGCTGTTTTCGCGAGCAGGTGAAAATGGCCGAGAACTTGCTGGACGGACCGCCCAACCCCAAACGAGCCAAACTCAGCTCGCCCGGCTTCTCGGCGAATGACAGCACAG
Seq A exon
ATTTTGGATCATTGTTTGACTTGGAAAATGATCTTCCTGATGAGTTGATCCCCAATGGAGGAGAATTAAGCCTTTTAAACAGTGGGAACCTCGTTCCAGATGCTGCTTCCAAACATAAACAACTGTCCGAGCTCCTGCGAGGCGGCAGCAGCTCCAGCATCAACCCGGGAATAGGCAATGTGAGTGCCAGCAGCCCCGCGCAGCAAGGCCTCGGCAGCCAGGCCCAGGGGCAGCCCAGCAGTGCCAACATGGCCAGTCTGGGTGCCATGGGCAAGAGCCCTCTGAACCAGGGAGATTCTTCCGCCCCCAGCCTGCCTAAGCAGGCAGCCAGCACCTCCGGGCCCACTCCTCCTGCTTCCCAAGCACTGAATCCGCAAGCACAAAAGCAAGTGGGGCTGGTGACCAGCAGCCCTGCCACGTCGCAGACGGGACCTGGGATCTGCATGAACGCAAACTTCAACCAAACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCACGGTTTAATGAACCAGGCCCAGCAAGGACAGGCGCAGGTTATGAATGGATCTCTTGGGGCTGCTGGCCGAGGAAGGGGAGCTGGGATGCCATACCCTACTCCGGCCATGCAGGGGGCCACAAGCAGTGTGCTGGCTGAGACGTTGACCCAAGTTTCACCGCAAATGGCCAGTCACGCAGGGCTGAACACCGCACAGGCCGGAGGCATGAGCAAG
Seq C2 exon
ATGGGAATGACTGGTAACACAAGTCCATTTGGACAACCCTTTAGTCAAACTGGAGGGCAGCAGATGGGAGCCCCTGGAGTGAACCCTCAGCTGCCGAGCAAGCAGAGCATGGTCAACAGCTTGCCTCCGTTTGCCGCAGACATCAAGAACGCTTCAGTCACCAACGTGCCAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=1.000 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCTGTTTTCGCGAG
R:
CGTTGGTGACTGAAGCGTTCT
Band lengths:
278-991
Functional annotations
There are 1 annotated functions for this event
PMID: 9192902
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified, two hybrid. ELM ID: ELMI000789; ELM sequence: QLSELLR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]