MmuEX0012690 @ mm9
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4154857-4213404:-
Coord C1 exon
chr16:4213139-4213404
Coord A exon
chr16:4179424-4180133
Coord C2 exon
chr16:4154857-4155033
Length
710 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCTTAATTTCTAGATT
3' ss Score
8.4
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTGTTGCTGAGGCTGAGATTTGGCCGCCGCCTCCCCCACCCGGCCTGCGCCCTCCGCGGCCCGGCCCGCGCTCCTGCGCTCGCTCCTCGCTGGCTCGCCTGCTCGCAGCCGCCGGCCCGACCCCCGTCCGGGCCGCGTCGCGCCGCCCGCGCTCAGGGCTGTTTCCGCGAGCAGGTGAAGATGGCCGAGAACTTGCTGGACGGACCGCCCAACCCCAAACGAGCCAAACTCAGCTCGCCCGGCTTCTCCGCGAATGACAACACAG
Seq A exon
ATTTTGGATCATTGTTTGACTTGGAAAATGACCTTCCTGATGAGCTGATCCCCAATGGAGAATTAAGCCTTTTAAACAGTGGGAACCTTGTTCCAGATGCTGCGTCCAAACATAAACAACTGTCAGAGCTTCTTAGAGGAGGCAGCGGCTCTAGCATCAACCCAGGGATAGGCAATGTGAGTGCCAGCAGCCCTGTGCAACAGGGCCTTGGTGGCCAGGCTCAGGGGCAGCCGAACAGTACAAACATGGCCAGCTTAGGTGCCATGGGCAAGAGCCCTCTGAACCAAGGAGACTCATCAACACCCAACCTGCCCAAACAGGCAGCCAGCACCTCTGGGCCCACTCCCCCTGCCTCCCAAGCACTGAATCCACAAGCACAAAAGCAAGTAGGGCTGGTGACCAGTAGTCCTGCCACATCACAGACTGGACCTGGGATCTGCATGAATGCTAACTTCAACCAGACCCACCCAGGCCTTCTCAATAGTAACTCTGGCCATAGCTTAATGAATCAGGCTCAACAAGGGCAAGCTCAAGTCATGAATGGATCTCTTGGGGCTGCTGGAAGAGGAAGGGGAGCTGGAATGCCCTACCCTGCTCCAGCCATGCAGGGGGCCACAAGCAGTGTGCTGGCGGAGACCTTGACACAGGTTTCCCCACAAATGGCTGGCCATGCTGGACTAAATACAGCACAGGCAGGAGGCATGACCAAG
Seq C2 exon
ATGGGAATGACTGGTACCACAAGTCCATTTGGACAACCCTTTAGTCAAACTGGAGGGCAGCAGATGGGAGCCACTGGAGTGAACCCCCAGTTAGCCAGCAAACAGAGCATGGTCAATAGTTTACCTGCTTTTCCTACAGATATCAAGAATACTTCAGTCACCACTGTGCCAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=1.000 C2=0.949
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAGGCTGAGATTTGGC
R:
TAACTGGGGGTTCACTCCAGT
Band lengths:
355-1065
Functional annotations
There are 1 annotated functions for this event
PMID: 9192902
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified, two hybrid. ELM ID: ELMI000789; ELM sequence: QLSELLR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: