RnoEX0024458 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11595044-11651092:+
Coord C1 exon
chr10:11595044-11595151
Coord A exon
chr10:11626519-11627228
Coord C2 exon
chr10:11650916-11651092
Length
710 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCTTGATTTCTAGATT
3' ss Score
8.16
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTGTTTCCGCGAGCAGGTGAAGATGGCCGAGAACTTGCTGGACGGACCGCCCAACCCCAAACGAGCCAAACTCAGCTCGCCCGGCTTCTCCGCGAATGACAGCACAG
Seq A exon
ATTTTGGATCATTGTTTGACTTGGAAAATGATCTTCCTGATGAGCTGATCCCCAATGGAGAATTAAGCCTTTTAAACAGTGGGAACCTTGTTCCAGATGCTGCGTCCAAACATAAACAACTGTCAGAGCTTCTTAGAGGAGGCAGCGGCTCTAGCATCACCCCCGGGATAGGCAATGTGAGTGCCAGCAGCCCTGTGCAGCAGGGCCTTGGTGGCCAGGCTCAGGGGCAGCCGAACAGTACAAGCATGGCCAGTTTAGGTGCCATGGGCAAGAGCCCTCTGAACCCAGGAGACTCATCAACACCCAGCCTGCCCAAACAGGCAGCCAGCACCTCTGGGCCCACTCCCCCTGCCTCCCAAGCACTGAATCCGCAAGCACAAAAGCAAGTGGGGCTGGTGACCAGTAGTCCTGCCACATCACAGACTGGACCTGGGATCTGCATGAATGCTAACTTCAACCAGACCCACCCAGGCCTTCTCAATAGTAACTCTGGCCATAGCTTAATGAATCAGGCTCAACAAGGGCAAGCTCAAGTCATGAATGGATCTCTTGGGGCTGCTGGAAGAGGAAGGGGAGCTGGAATGCCCTACCCTGCTCCAGCCATGCAGGGGGCCACAAGCAGTGTGCTGGCTGAGACTTTGACACAGGTTTCTCCACAAATGGCTGGCCATGCTGGACTGAATACGGCACAGGCAGGAGGCATGACCAAG
Seq C2 exon
ATGGGGATGACTGGTAACACAAGTCCGTTTGGACAACCCTTTAGTCAAACTGGAGGGCAGCCGATGGGAGCCACTGGAGTGAACCCTCAGTTAGCCAGCAAACAGAGCATGGTCAATAGTTTGCCTGCTTTTCCTACAGATATCAAGAATACTTCAGTCACCACTGTGCCAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'0-2,'0-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=1.000 C2=0.949
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGCGAGCAGGTGAAG
R:
AGTGGTGACTGAAGTATTCTTGA
Band lengths:
270-980
Functional annotations
There are 1 annotated functions for this event
PMID: 9192902
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified, two hybrid. ELM ID: ELMI000789; ELM sequence: QLSELLR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]