DreEX0024221 @ danRer10
Exon Skipping
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9718384-9755740:-
Coord C1 exon
chr3:9754914-9755740
Coord A exon
chr3:9738486-9739132
Coord C2 exon
chr3:9718384-9718545
Length
647 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCTGTTTCTCCAGACT
3' ss Score
9.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGATGGACATGGAGCTTGAAGGTCTTTATTTATATTCGCAGAAAATCGCCTTTTTGAAGAGACCCACGCGAACCACTTGAAGGACCCAGGATTGCTGTTTTTTTCGCCCTCGTCGTTTATTTTTCGGTTTTAACGATGATATAATTTATTTTCGCGGGGTTTGGGGTGATCATTAAGGTTAATTATGCGGGTTTTGGGTGTTGGATTATCATGGGGTGAATGGCGGTGGCGGAGCGGGGCGCTGTTGAGTCGCGTTTGAGCCCCATCTGTTAATTATTGGCCCCTGATCGCTGAATAATAATAGAAAAACCCGAGGCTTGATTTGATTTATTTCGCTTTGTCCCCCCTCCCGGGCTCTTGGAAGACGCATTTATTGCTTTGACGTGGTTTTTTTGTGAAGCGAGAGAGCACGATGGCTGATAATCTACTGGATATGGGTCCCTCCGCCGCAAAGCGGCCCAAACTGAACTCACCTGCCCTATCCTCCTCCGACACTCCAG
Seq A exon
ACTTCGTGTCCTTGTTCGACTTGGAAAATGATCTTCCAGATGAGCTGATACCCAACGGAGACCTGGGCCTGATGTCCATGCCCTCTAATGGAGATGGAGGGGTTGGAAGCAGGATGGGGGGCAATGTCCCGGATGCTGCTGCCAAGCACAAGCAGCTATCCCAGCTCTTGCAGGCAGGGAGCGGCTCTGGTCTGGGTGGAAACCTCAGCCCTCAGTCTGGTATGGGTGGACAACTGGGTGCCTTGGGCAAGAGTCCCATGGGCCAGGGCTCACCTGGACACCAGACCCAAGCTCCCAAGCCTGTCGGGACCCCTACCGGTCAGGGCAACAACAGCCCTGGAATGGGCATGAATACAGGTTTCAACCCGGCCATGCTGAACAATAACAACCAGGCTCATGGACTTATGGGGCAGAACATGACTCCGCAGGGGCAGATGATGAATGGTGTGATGGGACCGGCCGGAAGAGGCAGGACAGCTCCAGGGATGCAGTACCAGGGACAGGGCATGCAGGGGGCACCTGTCGGAGCAGGCGGTGGGCAGGGAGTCGGTGTTTCTGGCAGCGTATTGGCGGAGACGCTTACCCAGGGTGCACCACAGATGGGGGCACACAATGCCATCAATCAGCAAGCGGGGAATATGAACAAG
Seq C2 exon
ATGGGGCTTGCAACAGCTAATGGTCCTTTCGGGCAGCAGTACGTACAGGGTTCGGTTCAGCAGATGTCCAACGCTGGATTAAACGCTCAGATGCAGAACAAGGCAGCTCTTCCTAACAGCCTCCAGCCCACCCTGAAGGGTGCTTCCAGCGTGCCAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.796
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTGAGCCCCATCTGTTA
R:
GAGCTGCCTTGTTCTGCATCT
Band lengths:
358-1005
Functional annotations
There are 1 annotated functions for this event
PMID: 9192902
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified, two hybrid. ELM ID: ELMI000789; ELM sequence: QLSELLR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]