DreEX0024201 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26908854-26912359:+
Coord C1 exon
chr22:26908854-26909102
Coord A exon
chr22:26911598-26911744
Coord C2 exon
chr22:26912179-26912359
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTAATACTGTCTCTTTCAGACT
3' ss Score
9.47
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
CAGCAGCCGAACGCTAACCTCCCCCTGAATGCACTTGGCCCCTTGGGCCCTGCGCTAGGCTGCCCCACGCCCCCTCAGGCTCCACTGCGCGCCACACCGCCCCCCAACGCCACCGCCGCCAGCACCACTAACCTGCCAGCAGCACTGCAGCCCTCCACACCCACCCCCGCCCCTGCCCAGGCCACCCCGCCGCACATGCAGACCCAGGCTGAGCTGCCCATCCCTGGCCAGCAGCACCCTGGAACACCG
Seq A exon
ACTGGTGAAAACCGTGTACCCACGCCAGCGTCAGCAGCCAGCACTGAGCTGCACTCCCAGCATGCTGTGCCTGACGTACCACCCAATGACACTAAAACAGAAGAGCAGGATTACGACATGGCCGTCAAAACAGAGCCCAGCACGGAG
Seq C2 exon
ACAGAGGAAGACACAGGCTCACTGCTAGTCAAAAAGGAGGAGCAGGAGGGCTCGGAGGCCAAGCAGGAGCCAATGGAGACAGAGGACAAGAAGACTGACTTAAAGACGGAGACCAAAGAGGAGGATGAAAGCAAGACAAACGGCACAGCGTCCTCTTCACCGTCACAGTCTCGCAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'15-21,'15-20,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCTCCCCCTGAATGCACT
R:
TGAGCCTGTGTCTTCCTCTGT
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]