RnoEX6046240 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11687346-11690122:+
Coord C1 exon
chr10:11687346-11687759
Coord A exon
chr10:11688852-11689031
Coord C2 exon
chr10:11689933-11690122
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGATTTTGATTTCTTTGCAGCTT
3' ss Score
8.67
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCCAGGTGCCTGGAGGTACACTTCCTAACCCTCTGAACATGCTGGCGCCCCAGACCAGCCAGCTTCCTTGCCCACCAGTGACACAGTCACCTTTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAGCATCCGACACCACCAGGGATGACCCCTCCCCAGCCAGCAGCTCCCACTCAGCCATCCACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGTGCTGCCCAAACACAGAGCACCCCAACAGTGCAGGCAGCAGCACAGGCTCAGGTGACCCCACAGCCTCAGACTCCAGTGCAGCCACCATCTGTGGCCACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCG
Seq A exon
CTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCTGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAACCTGATCCTGCTGAATCCAAGGGGGAACCCCGCTCTGAG
Seq C2 exon
ATGATGGAAGAGGATTTACAAGGTTCTTCCCAAGTAAAAGAAGAAACAGATACAACAGAGCAGAAGTCAGAACCAATGGAAGTAGAAGAAAAGAAACCCGAAGTAAAAGTGGAAGCTAAAGAGGAAGAAGAGAACAGTGCTAACGGCACAGCCTCACAGTCAACATCCCCTTCCCAGCCACGCAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'19-20,'19-17,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCACTCCTCAGTCATCA
R:
TGGGAAGGGGATGTTGACTGT
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]