MmuEX6060580 @ mm10
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4114774-4117668:-
Coord C1 exon
chr16:4117255-4117668
Coord A exon
chr16:4115778-4115957
Coord C2 exon
chr16:4114774-4114963
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGACTGTGATTTCTTTGCAGCTT
3' ss Score
9.34
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCG
Seq A exon
CTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCCGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAGCCTGAACCTACTGAATCCAAGGGGGAACCTCGGTCTGAG
Seq C2 exon
ATGATGGAAGAGGATTTACAAGGTTCTTCCCAAGTAAAAGAAGAGACAGATACGACAGAGCAGAAGTCAGAGCCAATGGAAGTAGAAGAAAAGAAACCTGAAGTAAAAGTGGAAGCTAAAGAGGAAGAAGAGAACAGTTCGAACGACACAGCCTCACAATCAACATCTCCTTCCCAGCCACGCAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'27-27,'27-24,28-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCCAACTCCTGGCTCAG
R:
GCTCTGACTTCTGCTCTGTCG
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types