BtaEX6108240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3078483-3081969:-
Coord C1 exon
chr25:3081553-3081969
Coord A exon
chr25:3079595-3079774
Coord C2 exon
chr25:3078483-3078672
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGATTTTGGTTTCCCCACAGCTT
3' ss Score
9.6
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGGCAAGTGCCAGGGGCCGCTCTTCCCAACCCCCTGAACATGCTTGGGCCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGCCTCCGCTGCATCAGACCCCGCCTCCCGCCTCCACGGCCGCCGGCATGCCGTCTCTGCAGCACCCAGCAGCTCCCGGGGTGACGCCCCCCCAGCCAGCTGCGCCTACCCAGCCTTCAACTCCCGCGTCGTCTTCCGGGCAGACTCCCACCCCGACTCCTGGCTCCGTGCCCAGCGCCAGCCAGACGCAGAGTACTCCTACGGTCCAGGCAGCCGCCCAGGCCCAGGTGACCCCGCAGCCTCAGACCCCAGTGCAGCCTCCATCCGTGGCCACCCCACAGTCATCGCAGCAGCAGCCAACACCTGTGCACACGCAGCCCCCCGGCACCCCG
Seq A exon
CTTTCCCAGACAGCAGCCAGCATTGATAACAGGGTCCCCACTCCATCCTCAGTGGCCAGCGCCGAAACCAACTCCCAGCAGCCAGGCCCCGAGGTGCCACTGCTGGAGATGAAGGCTGAGATCAAGACCGAGGACACAGAGCCCGATGCTGGGGAGCCCAAGGGAGAGCCTGGGGCTACG
Seq C2 exon
ATGATGGAGGAGGACTTACAAGGATCTTCTCAAGTTAAAGAAGAAACAGACCCGACAGAGCAGAAGTCAGAACCAATGGAAGTGGATGAAAAGAAAACTGAAGTGAAGGTCGAAGCTAAAGAGGAAGAAGAGGGCAGCACCAATGGGACAGCCTCTCAGTCCACGTCCCCTTCGCAGCCTCGCAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'14-16,'14-13,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTCCTACGGTCCAGGCAG
R:
AGCTTCGACCTTCACTTCAGT
Band lengths:
257-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]