DreEX0024528 @ danRer10
Exon Skipping
Gene
ENSDARG00000044414 | csmd1a
Description
CUB and Sushi multiple domains 1a [Source:ZFIN;Acc:ZDB-GENE-050417-402]
Coordinates
chr13:6213950-6350037:+
Coord C1 exon
chr13:6213950-6214229
Coord A exon
chr13:6289800-6290016
Coord C2 exon
chr13:6349925-6350037
Length
217 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTTTATGTCCTTAGGTC
3' ss Score
11.55
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCTGTCTCCAAGGTTTGGATCGAGGGAATCACTTTTGGTTTCAACACCACCGTGTCTCATCTCTGCAGTGGCTAATCTCGGTGATATGAGAGCTAATATAGACGAATCCGTGTGCCATAGGCGTCAGATGTTCTTGCCAAAACTGGATCTCTATGCATTACAGTGATCGGTGAGAATAAAACGCAAGACACCGTGGCGCTGCGTGGAATTACAGCGGACAAGATGGGCACGTTGAAGCACATCCTGCTGCTTTTCACAGGTTTTGTGGCCGCAGCTCACG
Seq A exon
GTCAGACTTGTGGCGGCCTTATACAAGGTCTCAATGGAACTATAGAGAGTCCTGGCTTTCCCCATGGCTACCCCAACTATGCCAACTGTACATGGATCATAGTCACTGGAGAGCGGAATAGGATACAGTTGTACTTCCACACCTTCGCTCTGGAGGAGGACTTTGACATCGTCTCCATCTATGATGGACAACCACAGCCAGGCAACCTGAAGATGAG
Seq C2 exon
GTTGTCTGGCTTCATGTTGCCATCACCTATCGTAAGTTCGGGGTCCATTTTGGCACTGTGGTTTACTACAGATTTTGCAGTCAGTGCCCAAGGATTTAAAGCAATCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044414-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=94.5)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGTCTCATCTCTGCAGT
R:
ACCACAGTGCCAAAATGGACC
Band lengths:
294-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]