MmuEX6034657 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:17027225-17535281:-
Coord C1 exon
chr8:17534890-17535281
Coord A exon
chr8:17216607-17216823
Coord C2 exon
chr8:17027225-17027337
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTTTCTTCCCAGGTC
3' ss Score
12.25
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGTGCCTTCCTGCCCGGCTCGGCCGGCGCTCGTCCCCGGCCCCGGCAGCCCCGGGGCTGCGCTCGCTCAGAGCATCTTCAGCCCCGCAGTGGCTCGGACCCGATGCTACGGGAGCGGAGCGAGCCGGGCGCGCAGAGCTGCGGGAGGCGTCAGATGCGCGGCCGGGCTGGGGACCCGGAGCTCTTGCCAGCTCGCCTTGCCCTTTGGTGATTACCGGACTCTGTTTAGAGCCCGGTTGTTCCTCGGAGGAGACCGGCGCATCCGAGAGGAGCCATCCGTGTCGTGTGCGTGTGGAATATCTGCAGACATGACTGCGTGGAGGAAATTCAAGTCGCTGCTCCTGCCTCTGGTGCTGGCGGTTCTGTGCGCGGGGCTCCTCACTGCAGCTAAGG
Seq A exon
GTCAGAACTGTGGTGGCCTGGTACAGGGACCTAATGGCACCATTGAAAGTCCTGGCTTTCCTCATGGGTACCCCAACTATGCCAACTGCACCTGGATCATTATTACTGGGGAGCGCAACAGGATTCAGCTATCCTTCCATACCTTTGCCCTAGAGGAGGACTTTGACATTTTATCTGTCTATGATGGACAGCCCCAGCAAGGGAACTTGAAAGTGAG
Seq C2 exon
GCTGTCAGGATTCCAGCTGCCTTCCTCCATCGTGAGCACCGGGTCGCTCCTCACGCTCTGGTTCACCACGGACTTTGCAGTGAGCGCACAGGGTTTCAAGGCCATGTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'0-10,'0-8,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=94.5)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGCCCTTTGGTGATTA
R:
ACATGGCCTTGAAACCCTGTG
Band lengths:
307-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types