DreEX0024947 @ danRer10
Exon Skipping
Gene
ENSDARG00000090428 | ctrb1
Description
chymotrypsinogen B1 [Source:ZFIN;Acc:ZDB-GENE-030131-1171]
Coordinates
chr7:34804904-34806805:+
Coord C1 exon
chr7:34804904-34804983
Coord A exon
chr7:34805163-34805241
Coord C2 exon
chr7:34806672-34806805
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATCATGTATTCTTTTTACAGAAC
3' ss Score
8.89
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACTCCACTGGCTTCCACTTTTGCGGAGGCTCCCTGATCAATGAGAATTGGGTTGTGACTGCTGCTCATTGCAACGTTAG
Seq A exon
AACCTCTCACCGCGTTATCCTTGGCGAGCATGATCGTTCATCCAATGCTGAGGCTATTCAGACCATTGCCGTTGGAAAG
Seq C2 exon
CTCCCGATACTCCTGCCCTGCTCCAGCAGGCCGCTCTGCCTCTGCTGACCAATGATGACTGCAAGCGTTACTGGGGAACCAACATCACTGATCTGATGATCTGCGCTGGAGCTTCTGGTGTCTCTTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090428_MULTIEX1-7/8=6-C2
Average complexity
C3
Mappability confidence:
100%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(11.7=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGGCTTCCACTTTTGC
R:
CAGTGATGTTGGTTCCCCAGT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]