DreEX0024948 @ danRer10
Exon Skipping
Gene
ENSDARG00000090428 | ctrb1
Description
chymotrypsinogen B1 [Source:ZFIN;Acc:ZDB-GENE-030131-1171]
Coordinates
chr7:34805163-34806805:+
Coord C1 exon
chr7:34805163-34805241
Coord A exon
chr7:34806364-34806544
Coord C2 exon
chr7:34806672-34806805
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTGCACCTTTTTCCCAACAGTCC
3' ss Score
9.69
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
AACCTCTCACCGCGTTATCCTTGGCGAGCATGATCGTTCATCCAATGCTGAGGCTATTCAGACCATTGCCGTTGGAAAG
Seq A exon
TCCATCAAGCATCCTAACTACAACAGCTTCACCATCAACAATGACATCCTGCTGATCAAGCTGGCCACTCCTGCTAAGATCAACACTCACGTGTCTCCTGTGTGTCTCGCCGAGACCAACGACAACTTCCCTGGTGGCATGAAGTGTGTGACCTCTGGATGGGGCCTGACCAGATACAATG
Seq C2 exon
CTCCCGATACTCCTGCCCTGCTCCAGCAGGCCGCTCTGCCTCTGCTGACCAATGATGACTGCAAGCGTTACTGGGGAACCAACATCACTGATCTGATGATCTGCGCTGGAGCTTCTGGTGTCTCTTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090428_MULTIEX1-8/8=7-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCACCGCGTTATCCTT
R:
TGCAAGAAGAGACACCAGAAGC
Band lengths:
210-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]