BtaEX6079290 @ bosTau6
Exon Skipping
Description
Chymotrypsinogen A Chymotrypsin A chain A Chymotrypsin A chain B Chymotrypsin A chain C [Source:UniProtKB/Swiss-Prot;Acc:P00766]
Coordinates
chr18:2605841-2606649:+
Coord C1 exon
chr18:2605841-2605919
Coord A exon
chr18:2606258-2606438
Coord C2 exon
chr18:2606516-2606649
Length
181 bp
Sequences
Splice sites
3' ss Seq
CGCCCCGCCCCCCCACACAGGTT
3' ss Score
9.4
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AACCTCTGATGTGGTAGTGGCTGGGGAGTTTGACCAAGGCTCAAGCTCTGAGAAGATCCAGAAGCTGAAGATCGCCAAG
Seq A exon
GTTTTCAAGAACTCCAAGTACAACTCGTTAACCATCAACAATGACATCACCCTGCTGAAGCTGTCCACGGCTGCAAGCTTCTCCCAGACTGTGTCTGCTGTGTGCCTGCCCAGCGCCAGCGACGACTTCGCTGCCGGGACGACGTGCGTCACCACAGGCTGGGGCCTGACCCGATACACCA
Seq C2 exon
ATGCCAACACCCCTGACCGGCTGCAGCAGGCGTCCCTGCCCCTCCTGTCCAACACCAACTGCAAGAAATACTGGGGCACTAAGATCAAAGATGCCATGATCTGTGCGGGCGCCAGCGGTGTCTCCTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011995-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGATGTGGTAGTGGCT
R:
CATGCAAGAGGAGACACCGC
Band lengths:
212-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]