GgaEX7008084 @ galGal4
Exon Skipping
Description
chymotrypsinogen 2-like precursor [Source:RefSeq peptide;Acc:NP_001264565]
Coordinates
chr11:1959409-1960374:-
Coord C1 exon
chr11:1960296-1960374
Coord A exon
chr11:1959659-1959839
Coord C2 exon
chr11:1959409-1959542
Length
181 bp
Sequences
Splice sites
3' ss Seq
CAGTGCTGCCGCTGCCGCAGGTC
3' ss Score
4.4
5' ss Seq
ACGGTACCG
5' ss Score
7.03
Exon sequences
Seq C1 exon
GACCACCGACACCGTGGTGCTGGGCGAGTACGACCAGGAGACGGCCTCCAGTGACGTGCAGAGGTTGGGCATCGCCAAG
Seq A exon
GTCTTCCGGAACCCCAGCTACAGCTCGCTGACCATCCGCAACGACATCACGCTGATCAAGCTGGCCACCCCAGCACAGCTGAACGCCCGCGTGGCGCCCGTCTGCCTGCCCCAGGCCACCGACGACTTCCCCGGGGGCCTGACCTGCGTCACCACGGGCTGGGGGCTCCTCAACTCCAACG
Seq C2 exon
ATGAGAACACGCCGGCCATCCTGCAGCAAGCGGCCCTTCCCCTGCTCACCAACGCGCAGTGCAAGCAGTACTGGGGCTTCCGCATCTACGACGTGATGGTGTGCGCCGGGGCCGACGGATCCTCCTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCGACACCGTGGT
R:
ATGCAGGAGGAGGATCCGTC
Band lengths:
212-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]